Peterlin B, Liu P, Wang X, Cary D, Shao W, Leoz M, Hong T, Pan T, Fujinaga K. Hili inhibits HIV replication in activated T cells. J Virol 2017 pii: JVI.00237-17
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Li C *, Hong T *, Yen Y, Lu Y, Chang M, Nie Q, Chen J. MicroRNA filters hox transcription noise and confers robust boundary formation in the spinal cord. Nat Commun 2017, 8: 14685 (* equal contributions)
[Link] [Article]

Li C, Hong T, Webb C, Karner H, Sun S, Nie Q. A self-enhanced transport feedback mechanism for X chromosome inactivation. Sci Rep 2016, 6:31517
[Link] [Article]

Ta CH, Nie Q, Hong T *. Controlling stochasticity in epithelial-mesenchymal transition through multiple intermediate cellular states. Discrete Continuous Dyn Syst Ser B 2016, 21(7): 2275-2291 (* corresponding author)
[Link] [Article]

Li C, Hong T, Nie Q. Quantifying the landscape and kinetic paths for epithelial–mesenchymal transition from a core circuit. Phys Chem Chem Phys 2016, 18: 17949-17956
[Link] [Article]

Hong T *, Watanabe K *, Ta CH, Villarreal-Ponce A, Nie Q, Dai X. An Ovol2-Zeb1 Mutual Inhibitory Circuit Governs Bidirectional and Multi-step Transition between Epithelial and Mesenchymal States. PLoS Comput Biol 2015, 11(11): e1004569 (* equal contributions)
[Link] [Article]

Hong T, Fung ES, Zhang L, Huynh G, Monuki ES, Nie Q. Semi-adaptive response and noise attenuation in BMP signaling. J R Soc Interface 2015, 12 (107): 20150258
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Hong T, Oguz C, Tyson JJ. A mathematical framework for understanding four-dimensional heterogeneous differentiation of CD4+ T cells. Bull Math Biol 2015, 77 (6): 1046-1064
[Link] [Article]

Chen Z, Barbi J, Bu S, Yang HY, Li Z, Gao Y, Jinasena D, Fu J, Lin F, Chen C, Zhang J, Yu N, Li X, Shan Z, Nie J, Gao Z, Hong T, Li Y, Yao Z, Zheng Y, Park BV, Pan Z, Zhang J, Dang E, Li Z, Wang H, Luo W, Li L, Semenza GL, Zheng SG, Loser K, Tsun A, Greene MI, Pardoll DM, Pan F, Li B. The ubiquitin ligase Stub1 negatively modulates regulatory T cell suppressive activity by promoting degradation of the transcription factor Foxp3. Immunity 2013, 39(2):272-85
[Link] [Article]

Jensen RV, DePasquale, SM, Harbolick EA, Hong T, Kernell AL, Kruchko DH, Modise T, Smith CE, McCarter LL, Stevens AM. Complete Genome Sequence of Pre-pandemic Vibrio parahaemolyticus BB22OP. Genome Announcements 2013, 1
[Link] [Article]

Hong T, Xing J, Li L, Tyson JJ. A simple theoretical framework for understanding heterogeneous differentiation of CD4+ T cells. BMC Syst Biol 2012, 6: 66
[Link] [Article]

Lin X, Hong T, Mu Y, Torres J. Identification of residues involved in water versus glycerol selectivity in aquaporins by differential residue pair co-evolution. Biochim Biophys Acta 2012, 1818(3):907-14
[Link] [Article]

Hong T, Xing J, Li L, Tyson JJ. A mathematical model for the reciprocal differentiation of T helper 17 cells and induced regulatory T cells. PLoS Comput Biol 2011, 7(7):e1002122
[Link] [Article]